EnhancerDB
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  3. rs538540420[chr17:39823155]
Enhancers that have rs538540420[chr17:39823155]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39816776 39838995 enh4409
Bone Marrow (K562) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (T-cell) Lung (PC-9) Blood (GM12878) Placenta Colon (HCT116) Uterus Thyroid Blood (Karpas-422) Peripheral Blood (MM.1S) Pancreas Neural Stem Cells (H9) Thymus
Transcript factors that have rs538540420[chr17:39823155]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39822974 39823598 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21758178
chr17 39822974 39823598 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108259390
chr17 39823099 39823603 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108259391
chr17 39823135 39823155 RREB1 JASPAR yes 54270578
chr17 39823135 39823156 ZNF263 JASPAR yes 54270579
chr17 39823135 39823711 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108259392
chr17 39823137 39823157 RREB1 JASPAR yes 54270581
chr17 39823138 39823158 RREB1 JASPAR yes 54270583
chr17 39823138 39823159 ZNF263 JASPAR yes 54270584
chr17 39823139 39823160 ZNF263 JASPAR yes 54270585
chr17 39823140 39823160 RREB1 JASPAR yes 54270587
chr17 39823143 39823158 NR2C2 JASPAR yes 54270589
chr17 39823145 39823155 SP1 JASPAR yes 54270590
chr17 39823146 39823156 SP1 JASPAR yes 54270592
chr17 39823147 39823157 SP1 JASPAR yes 54270593
chr17 39823150 39823160 MZF1 JASPAR yes 54270594
chr17 39823153 39823159 SP1 TRANSFAC yes 54270595
Genes associated with rs538540420[chr17:39823155], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More