EnhancerDB
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  3. rs538727972[chr1:205510217]
Enhancers that have rs538727972[chr1:205510217]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205502445 205516735 enh12593
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Astrocyte Lung Stomach Placenta Lung (PC-9) Pancreas Heart
chr1 205510005 205510378 vista4754
VISTA
Transcript factors that have rs538727972[chr1:205510217]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205509937 205510730 ZNF274 GTRD no Bone Marrow (K562) 107862311
chr1 205510068 205510951 TCF7L2 GTRD no Colon (HCT116) 107862312
chr1 205510117 205510527 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107862313
chr1 205510130 205511100 ZNF143 GTRD no Epithelial (MCF-7) 21372073
chr1 205510130 205511100 ZNF143 GTRD no Epithelial (MCF-7) 107862314
chr1 205510160 205511073 ZNF143 GTRD no Epithelial (MCF-7) 21372074
chr1 205510160 205511073 ZNF143 GTRD no Epithelial (MCF-7) 107862315
chr1 205510162 205511170 ZNF143 GTRD no Epithelial (MCF-7) 21372075
chr1 205510162 205511170 ZNF143 GTRD no Epithelial (MCF-7) 107862316
chr1 205510183 205510807 ZNF274 GTRD no Blood (GM12878) 107862317
chr1 205510214 205510224 GSC JASPAR yes 34768965
chr1 205510214 205510224 GSC JASPAR yes 118441710
chr1 205510214 205510227 NFKB2 JASPAR yes 34768966
chr1 205510214 205510227 NFKB2 JASPAR yes 118441711
chr1 205510215 205510223 RHOXF1 JASPAR yes 34768967
chr1 205510215 205510223 RHOXF1 JASPAR yes 118441712
chr1 205510215 205510224 PITX3 JASPAR yes 34768968
chr1 205510215 205510224 PITX3 JASPAR yes 118441713
Genes associated with rs538727972[chr1:205510217], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More