EnhancerDB
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  3. rs539062512[chr1:202002638]
Enhancers that have rs539062512[chr1:202002638]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201996265 202020435 enh12533
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Epithelial (MCF-7) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs539062512[chr1:202002638]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202002348 202002955 ZNF143 GTRD no Epithelial (MCF-7) 21365492
chr1 202002398 202003087 ZNF274 GTRD no Cervix (HeLa-S3) 21365493
chr1 202002475 202002781 ZNF274 GTRD no Cervix (HeLa-S3) 21365494
chr1 202002506 202002749 ZNF274 GTRD no Liver (HepG2) 21365495
chr1 202002625 202002640 FOXP1 JASPAR yes 34543921
chr1 202002626 202002641 FOXP1 JASPAR yes 34543922
chr1 202002627 202002642 FOXP1 JASPAR yes 34543924
chr1 202002628 202002643 FOXP1 JASPAR yes 34543925
chr1 202002628 202002649 IRF1 JASPAR yes 34543926
chr1 202002629 202002644 FOXP1 JASPAR yes 34543927
chr1 202002629 202002650 IRF1 JASPAR yes 34543928
chr1 202002630 202002645 FOXP1 JASPAR yes 34543929
chr1 202002632 202002647 FOXP1 JASPAR yes 34543930
chr1 202002634 202002649 FOXP1 JASPAR yes 34543931
chr1 202002635 202002656 IRF1 JASPAR yes 34543932
Genes associated with rs539062512[chr1:202002638], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More