EnhancerDB
  1. Home
  2. SNP
  3. rs539220996[chr19:3383985]
Enhancers that have rs539220996[chr19:3383985]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3362205 3392371 enh17862
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Cervix (HeLa-S3) Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs539220996[chr19:3383985]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3383974 3383987 SMAD2 JASPAR yes 112126200
chr19 3383983 3383994 ESRRA JASPAR yes 112126201
chr19 3383983 3383996 NR2F1 JASPAR yes 112126202
chr19 3383984 3384002 ESR2 JASPAR yes 112126203
chr19 3383984 3384004 PPARG JASPAR yes 112126204
Genes associated with rs539220996[chr19:3383985], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More