EnhancerDB
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  3. rs539346024[chr1:226087260]
Enhancers that have rs539346024[chr1:226087260]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 226082305 226089228 enh47300
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Blood (T-cell) Esophagus Blood (OCI-LY7) Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Neural Stem Cells (H9) Thymus Stomach
chr1 226086980 226087330 vista5334
VISTA
Transcript factors that have rs539346024[chr1:226087260]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 226086704 226087374 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875214
chr1 226086827 226087280 ZNF274 GTRD no Bone Marrow (K562) 107875215
chr1 226086906 226087310 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107875218
chr1 226086926 226087263 ZNF274 GTRD no Bone Marrow (K562) 107875220
chr1 226086953 226087384 ZNF274 GTRD no Bone Marrow (K562) 107875223
chr1 226087028 226087338 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875229
chr1 226087109 226087289 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875230
chr1 226087122 226087378 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875231
chr1 226087123 226087373 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875232
chr1 226087135 226087399 CEBPB UCSC Txn Factor no Conserved 107875233
chr1 226087135 226087399 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875234
chr1 226087202 226087292 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875235
chr1 226087209 226087263 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107875236
chr1 226087249 226087270 IRF1 JASPAR yes 35777769
chr1 226087249 226087270 IRF1 JASPAR yes 118470081
chr1 226087251 226087266 PRDM1 JASPAR yes 35777770
chr1 226087251 226087266 PRDM1 JASPAR yes 118470082
chr1 226087252 226087266 STAT1 JASPAR yes 35777771
chr1 226087252 226087266 STAT1 JASPAR yes 118470083
chr1 226087253 226087267 IRF7 JASPAR yes 35777772
chr1 226087253 226087267 IRF7 JASPAR yes 118470084
chr1 226087253 226087268 IRF9 JASPAR yes 35777773
chr1 226087253 226087268 IRF9 JASPAR yes 118470085
Genes associated with rs539346024[chr1:226087260], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More