EnhancerDB
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  3. rs539346447[chr19:959934]
Enhancers that have rs539346447[chr19:959934]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 927725 963215 enh4948
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Colon (HCT116) Thyroid Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Heart
Transcript factors that have rs539346447[chr19:959934]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 958552 960739 TCF7L2 GTRD no Colon (HCT116) 21831317
chr19 958552 960739 TCF7L2 GTRD no Colon (HCT116) 108349024
chr19 958613 961627 TCF7L2 GTRD no Colon (HCT116) 21831318
chr19 958613 961627 TCF7L2 GTRD no Colon (HCT116) 108349025
chr19 958723 962738 ZNF274 GTRD no Liver (HepG2) 21831320
chr19 958723 962738 ZNF274 GTRD no Liver (HepG2) 108349028
chr19 958724 960529 ZNF274 GTRD no Bone Marrow (K562) 21831321
chr19 958724 960529 ZNF274 GTRD no Bone Marrow (K562) 108349030
chr19 958738 960580 ZNF274 GTRD no Bone Marrow (K562) 21831324
chr19 958738 960580 ZNF274 GTRD no Bone Marrow (K562) 108349035
chr19 958765 961613 ZNF274 GTRD no Bone Marrow (K562) 21831329
chr19 958765 961613 ZNF274 GTRD no Bone Marrow (K562) 108349042
chr19 958798 963263 ZNF274 GTRD no Bone Marrow (K562) 21831341
chr19 958798 963263 ZNF274 GTRD no Bone Marrow (K562) 108349056
chr19 958957 960595 TCF7L2 GTRD no Colon (HCT116) 21831411
chr19 958957 960595 TCF7L2 GTRD no Colon (HCT116) 108349146
chr19 959927 959936 ZEB1 JASPAR yes 111987803
chr19 959930 959935 USF2 TRANSFAC yes 111987804
chr19 959934 959947 TFAP2A JASPAR yes 111987805
chr19 959934 959947 TFAP2B JASPAR yes 111987806
chr19 959934 959947 TFAP2C JASPAR yes 111987807
Genes associated with rs539346447[chr19:959934], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More