EnhancerDB
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  3. rs539366407[chr5:171602686]
Enhancers that have rs539366407[chr5:171602686]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171565199 171613524 enh8878
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs539366407[chr5:171602686]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171602198 171602926 POLR2A UCSC Txn Factor no Conserved 108537436
chr5 171602397 171602753 RUNX3 UCSC Txn Factor no Conserved 108537437
chr5 171602439 171602706 EBF1 UCSC Txn Factor no Conserved 108537438
chr5 171602504 171602713 SPI1 UCSC Txn Factor no Conserved 108537439
chr5 171602674 171602689 RFX5 JASPAR yes 67771644
chr5 171602674 171602689 RFX5 JASPAR yes 70760936
chr5 171602680 171602695 HNF4A JASPAR yes 67771646
chr5 171602680 171602695 HNF4A JASPAR yes 70760938
Genes associated with rs539366407[chr5:171602686], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More