EnhancerDB
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  3. rs539397099[chr1:3252409]
Enhancers that have rs539397099[chr1:3252409]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3220368 3259315 enh11429
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539397099[chr1:3252409]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3252405 3252420 TFAP2A JASPAR yes 26281533
chr1 3252406 3252415 TFAP2A JASPAR yes 26281534
chr1 3252407 3252416 TFAP2A JASPAR yes 26281535
chr1 3252408 3252428 PPARG JASPAR yes 26281536
Genes associated with rs539397099[chr1:3252409], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More