EnhancerDB
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  3. rs539603939[chr17:39700342]
Enhancers that have rs539603939[chr17:39700342]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39688905 39708275 enh17150
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs539603939[chr17:39700342]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39698423 39704417 ZNF274 GTRD no Liver (HepG2) 108258721
chr17 39698423 39704417 ZNF274 GTRD no Liver (HepG2) 108258722
chr17 39698872 39704440 ZBTB33 GTRD no Lung (A549) 21757673
chr17 39698872 39704440 ZBTB33 GTRD no Lung (A549) 108258723
chr17 39698872 39704440 ZBTB33 GTRD no Lung (A549) 108258724
chr17 39698902 39704314 ZBTB33 GTRD no Lung (A549) 21757674
chr17 39698902 39704314 ZBTB33 GTRD no Lung (A549) 108258725
chr17 39698902 39704314 ZBTB33 GTRD no Lung (A549) 108258726
chr17 39698974 39700981 ZBTB33 GTRD no Lung (A549) 21757675
chr17 39699311 39700442 ZBTB33 GTRD no Lung (A549) 21757676
chr17 39699358 39704306 ZBTB33 GTRD no Lung (A549) 21757678
chr17 39699358 39704306 ZBTB33 GTRD no Lung (A549) 108258727
chr17 39699358 39704306 ZBTB33 GTRD no Lung (A549) 108258728
chr17 39699359 39700881 ZBTB33 GTRD no Lung (A549) 21757679
chr17 39699377 39700508 ZBTB33 GTRD no Lung (A549) 21757681
chr17 39699393 39700733 ZBTB33 GTRD no Lung (A549) 21757682
chr17 39699405 39702125 ZNF274 GTRD no Cervix (HeLa-S3) 21757683
chr17 39699418 39700500 ZBTB33 GTRD no Lung (A549) 21757684
chr17 39699443 39700851 ZBTB33 GTRD no Lung (A549) 21757685
chr17 39699469 39701253 TCF7L2 GTRD no Colon (HCT116) 21757686
chr17 39699474 39704149 ZNF274 GTRD no Liver (HepG2) 108258729
chr17 39699474 39704149 ZNF274 GTRD no Liver (HepG2) 108258730
chr17 39699517 39700758 ZNF143 GTRD no Epithelial (MCF-7) 21757688
chr17 39699578 39700526 ZNF143 GTRD no Epithelial (MCF-7) 21757690
chr17 39699582 39701102 TCF7L2 GTRD no Colon (HCT116) 21757691
chr17 39699607 39701117 TCF7L2 GTRD no Colon (HCT116) 21757694
chr17 39699621 39704438 ZNF274 GTRD no Liver (HepG2) 108258731
chr17 39699621 39704438 ZNF274 GTRD no Liver (HepG2) 108258732
chr17 39699628 39700474 ZNF274 GTRD no Cervix (HeLa-S3) 21757695
chr17 39699641 39700569 ZNF274 GTRD no Cervix (HeLa-S3) 21757697
chr17 39699662 39700391 ZNF274 GTRD no Cervix (HeLa-S3) 21757699
chr17 39699689 39701166 TCF7L2 GTRD no Colon (HCT116) 21757700
chr17 39699691 39701139 TCF7L2 GTRD no Colon (HCT116) 21757702
chr17 39699694 39700688 ZBTB33 GTRD no Lung (A549) 21757703
chr17 39699695 39700641 ZNF143 GTRD no Epithelial (MCF-7) 21757704
chr17 39699711 39700571 TCF7L2 GTRD no Colon (HCT116) 21757706
chr17 39699715 39700862 ZBTB33 GTRD no Lung (A549) 21757707
chr17 39699729 39701226 TCF7L2 GTRD no Colon (HCT116) 21757709
chr17 39699742 39701228 TCF7L2 GTRD no Colon (HCT116) 21757712
chr17 39699743 39700972 TCF7L2 GTRD no Colon (HCT116) 21757713
chr17 39699752 39700470 ZBTB33 GTRD no Lung (A549) 21757714
chr17 39699752 39700473 TCF7L2 GTRD no Colon (HCT116) 21757715
chr17 39699754 39700487 ZNF143 GTRD no Epithelial (MCF-7) 21757717
chr17 39699771 39701310 TCF7L2 GTRD no Colon (HCT116) 21757718
chr17 39699896 39700576 TCF7L2 GTRD no Colon (HCT116) 21757721
chr17 39699966 39700411 TCF7L2 GTRD no Colon (HCT116) 21757722
chr17 39700067 39701023 ZNF274 GTRD no Bone Marrow (K562) 21757723
chr17 39700090 39700400 ZNF143 GTRD no Epithelial (MCF-7) 21757724
chr17 39700139 39700559 ZNF143 GTRD no Epithelial (MCF-7) 21757725
chr17 39700162 39702124 ZBTB33 GTRD no Lung (A549) 21757726
chr17 39700336 39700351 MEF2A JASPAR yes 54263313
chr17 39700337 39700349 FOXI1 JASPAR yes 54263314
chr17 39700338 39700350 FOXC2 JASPAR yes 54263315
chr17 39700338 39700350 MEF2A JASPAR yes 54263316
chr17 39700339 39700350 FOXB1 JASPAR yes 54263317
chr17 39700339 39700350 FOXC1 JASPAR yes 54263318
chr17 39700340 39700344 YY1 TRANSFAC yes 54263319
chr17 39700342 39700354 MEF2A JASPAR yes 54263320
Genes associated with rs539603939[chr17:39700342], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More