EnhancerDB
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  3. rs539617660[chr18:57615896]
Enhancers that have rs539617660[chr18:57615896]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr18 57615485 57630775 enh4882
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Esophagus Astrocyte Blood (OCI-LY7) Lung (A549) Blood (GM12878) Stomach Placenta Colon (HCT116) Blood (Karpas-422) Lung (PC-9) Muscle (Myotube) Epithelial (MCF-7)
Transcript factors that have rs539617660[chr18:57615896]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr18 57615883 57615896 DUXA JASPAR yes 111066948
chr18 57615886 57615896 POU6F2 JASPAR yes 111066952
chr18 57615886 57615901 HNF1A JASPAR yes 111066953
chr18 57615887 57615897 HOXB2 JASPAR yes 111066954
chr18 57615887 57615897 HOXB3 JASPAR yes 111066955
chr18 57615887 57615897 MNX1 JASPAR yes 111066956
chr18 57615887 57615900 HNF1B JASPAR yes 111066957
chr18 57615887 57615901 POU4F1 JASPAR yes 111066958
chr18 57615887 57615903 POU4F2 JASPAR yes 111066959
chr18 57615887 57615903 POU4F3 JASPAR yes 111066960
chr18 57615888 57615896 LBX1 JASPAR yes 111066961
chr18 57615888 57615896 PDX1 JASPAR yes 111066962
chr18 57615888 57615896 VAX1 JASPAR yes 111066963
chr18 57615888 57615896 VAX2 JASPAR yes 111066964
chr18 57615888 57615896 VSX1 JASPAR yes 111066965
chr18 57615888 57615896 VSX2 JASPAR yes 111066966
chr18 57615888 57615904 POU4F2 JASPAR yes 111066967
chr18 57615888 57615904 POU4F3 JASPAR yes 111066968
Genes associated with rs539617660[chr18:57615896], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More