EnhancerDB
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  3. rs539623613[chr15:40346348]
Enhancers that have rs539623613[chr15:40346348]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr15 40334765 40353183 enh16060
Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs539623613[chr15:40346348]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr15 40344689 40349243 AR GTRD no Prostate (PC-3) 21649476
chr15 40344689 40349243 AR GTRD no Prostate (PC-3) 108133763
chr15 40345577 40346452 TCF7L2 GTRD no Colon (HCT116) 21649480
chr15 40346180 40346625 ZNF274 GTRD no Cervix (HeLa-S3) 21649481
chr15 40346180 40346625 ZNF274 GTRD no Cervix (HeLa-S3) 108133764
chr15 40346278 40346710 ZNF274 GTRD no Liver (HepG2) 108133765
chr15 40346294 40346630 ZNF274 GTRD no Liver (HepG2) 108133766
chr15 40346310 40346503 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21649482
chr15 40346310 40346503 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108133767
chr15 40346312 40346660 ZBTB33 GTRD no Lung (A549) 108133768
chr15 40346342 40346359 ESR1 JASPAR yes 22923817
Genes associated with rs539623613[chr15:40346348], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More