EnhancerDB
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  3. rs539807079[chr12:111853423]
Enhancers that have rs539807079[chr12:111853423]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 111838834 111855141 enh2601
Brain (SK-N-SH) Prostate (RWPE1) Blood (T-cell) Lung (PC-9) Astrocyte Bone (Osteoblast) Blood (GM12878) Muscle (A673) Placenta Colon (HCT116) Uterus Pancreas (Panc1) Blood (Karpas-422) Muscle (Myoblast) Pancreas Embryonic Stem Cell Line (H1-hESC) Muscle (Myotube) Neural Stem Cells (H9) Thymus Heart
Transcript factors that have rs539807079[chr12:111853423]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 111853406 111853426 RREB1 JASPAR yes 123746173
chr12 111853410 111853430 RREB1 JASPAR yes 123746174
chr12 111853417 111853438 IRF1 JASPAR yes 123746175
chr12 111853418 111853439 IRF1 JASPAR yes 123746176
chr12 111853420 111853441 IRF1 JASPAR yes 123746177
chr12 111853421 111853442 IRF1 JASPAR yes 123746178
chr12 111853422 111853437 FOXP1 JASPAR yes 123746179
chr12 111853422 111853443 IRF1 JASPAR yes 123746180
chr12 111853423 111853438 FOXP1 JASPAR yes 123746181
Genes associated with rs539807079[chr12:111853423], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More