EnhancerDB
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  3. rs540061400[chr19:7482873]
Enhancers that have rs540061400[chr19:7482873]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 7469445 7495915 enh17893
Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Stomach Epithelial (MCF-7) Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
Transcript factors that have rs540061400[chr19:7482873]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 7481922 7484097 TCF7L2 GTRD no Colon (HCT116) 21846565
chr19 7481922 7484097 TCF7L2 GTRD no Colon (HCT116) 108381174
chr19 7482027 7484385 ZNF274 GTRD no Bone Marrow (K562) 108381175
chr19 7482469 7483762 TCF7L2 GTRD no Colon (HCT116) 21846566
chr19 7482469 7483762 TCF7L2 GTRD no Colon (HCT116) 108381176
chr19 7482513 7483896 TCF7L2 GTRD no Colon (HCT116) 21846567
chr19 7482513 7483896 TCF7L2 GTRD no Colon (HCT116) 108381177
chr19 7482543 7484127 TCF7L2 GTRD no Colon (HCT116) 21846568
chr19 7482543 7484127 TCF7L2 GTRD no Colon (HCT116) 108381178
chr19 7482563 7484061 TCF7L2 GTRD no Colon (HCT116) 21846569
chr19 7482563 7484061 TCF7L2 GTRD no Colon (HCT116) 108381179
chr19 7482742 7484100 ZNF274 GTRD no Bone Marrow (K562) 108381180
chr19 7482865 7482880 TFAP2A JASPAR yes 112326321
chr19 7482867 7482882 TFAP2A JASPAR yes 112326322
chr19 7482867 7482882 TFAP2C JASPAR yes 112326323
chr19 7482868 7482877 TFAP2A JASPAR yes 112326324
chr19 7482868 7482879 EBF1 JASPAR yes 112326325
chr19 7482869 7482878 TFAP2A JASPAR yes 112326326
chr19 7482872 7484379 ZNF274 GTRD no Cervix (HeLa-S3) 21846570
chr19 7482872 7484379 ZNF274 GTRD no Cervix (HeLa-S3) 108381181
chr19 7482873 7482878 SP1 TRANSFAC yes 112326327
Genes associated with rs540061400[chr19:7482873], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More