EnhancerDB
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  3. rs540141779[chr1:9620331]
Enhancers that have rs540141779[chr1:9620331]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 9595905 9627275 enh49
Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Kidney Epithelial (MCF-7) Skin (Keratinocyte) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Thymus Cervix (HeLa-S3) Esophagus Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
Transcript factors that have rs540141779[chr1:9620331]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 9620310 9620331 IRF1 JASPAR yes 26662138
chr1 9620312 9620333 IRF1 JASPAR yes 26662141
chr1 9620314 9620335 IRF1 JASPAR yes 26662143
chr1 9620318 9620333 PRDM1 JASPAR yes 26662144
chr1 9620319 9620340 IRF1 JASPAR yes 26662145
chr1 9620320 9620335 FOXP1 JASPAR yes 26662146
chr1 9620320 9620341 IRF1 JASPAR yes 26662147
chr1 9620325 9620340 FOXP1 JASPAR yes 26662148
chr1 9620328 9620343 STAT2 JASPAR yes 26662149
Genes associated with rs540141779[chr1:9620331], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More