EnhancerDB
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  3. rs540378027[chr1:232362353]
Enhancers that have rs540378027[chr1:232362353]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 232355377 232364194 enh43186
Skin (Keratinocyte) Prostate (PC-3) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Thyroid Embryonic Stem Cell Line (H1-hESC) Lung (PC-9) Muscle (Myotube) Blood (T-cell)
chr1 232362022 232362384 vista5550
VISTA
Transcript factors that have rs540378027[chr1:232362353]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 232362347 232362368 IRF1 JASPAR yes 36144957
chr1 232362347 232362368 IRF1 JASPAR yes 118480544
chr1 232362348 232362363 FOXP1 JASPAR yes 36144958
chr1 232362348 232362363 FOXP1 JASPAR yes 118480545
chr1 232362348 232362369 IRF1 JASPAR yes 36144959
chr1 232362348 232362369 IRF1 JASPAR yes 118480546
chr1 232362350 232362365 FOXP1 JASPAR yes 36144960
chr1 232362350 232362365 FOXP1 JASPAR yes 118480547
chr1 232362350 232362371 IRF1 JASPAR yes 36144961
chr1 232362350 232362371 IRF1 JASPAR yes 118480548
chr1 232362351 232362372 IRF1 JASPAR yes 36144962
chr1 232362351 232362372 IRF1 JASPAR yes 118480549
chr1 232362352 232362367 FOXP1 JASPAR yes 36144963
chr1 232362352 232362367 FOXP1 JASPAR yes 118480550
chr1 232362352 232362373 IRF1 JASPAR yes 36144964
chr1 232362352 232362373 IRF1 JASPAR yes 118480551
chr1 232362353 232362368 FOXP1 JASPAR yes 36144965
chr1 232362353 232362368 FOXP1 JASPAR yes 118480552
chr1 232362353 232362374 IRF1 JASPAR yes 36144966
chr1 232362353 232362374 IRF1 JASPAR yes 118480553
Genes associated with rs540378027[chr1:232362353], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More