EnhancerDB
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  3. rs540415662[chr5:171611876]
Enhancers that have rs540415662[chr5:171611876]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr5 171565199 171613524 enh8878
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Prostate (PC-3) Large Intestine Esophagus Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs540415662[chr5:171611876]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr5 171611870 171611882 NHLH1 JASPAR yes 67772813
chr5 171611871 171611881 TFAP4 JASPAR yes 67772814
chr5 171611871 171611883 TAL1 JASPAR yes 67772815
Genes associated with rs540415662[chr5:171611876], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More