EnhancerDB
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  3. rs540441780[chr2:39326008]
Enhancers that have rs540441780[chr2:39326008]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr2 39316774 39331447 enh5437
Prostate (PC-3) Brain (SK-N-SH) Large Intestine Blood (OCI-LY7) Blood (GM12878) Stomach Colon (HCT116) Peripheral Blood (MM.1S) Blood (Karpas-422) Lung (PC-9) Spleen Neural Stem Cells (H9) Epithelial (MCF-7)
Transcript factors that have rs540441780[chr2:39326008]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr2 39325997 39326016 RFX2 JASPAR yes 73181733
chr2 39326002 39326021 PAX5 JASPAR yes 73181734
chr2 39326004 39326008 LFA1 TRANSFAC yes 73181735
Genes associated with rs540441780[chr2:39326008], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More