EnhancerDB
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  3. rs540448828[chr1:205510279]
Enhancers that have rs540448828[chr1:205510279]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 205502445 205516735 enh12593
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Large Intestine Prostate (RWPE1) Astrocyte Lung Stomach Placenta Lung (PC-9) Pancreas Heart
chr1 205510005 205510378 vista4754
VISTA
Transcript factors that have rs540448828[chr1:205510279]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 205509937 205510730 ZNF274 GTRD no Bone Marrow (K562) 107862311
chr1 205510068 205510951 TCF7L2 GTRD no Colon (HCT116) 107862312
chr1 205510117 205510527 ZNF143 ENCODE Uniform TFBS no Embryonic Stem Cell Line (H1-hESC) 107862313
chr1 205510130 205511100 ZNF143 GTRD no Epithelial (MCF-7) 21372073
chr1 205510130 205511100 ZNF143 GTRD no Epithelial (MCF-7) 107862314
chr1 205510160 205511073 ZNF143 GTRD no Epithelial (MCF-7) 21372074
chr1 205510160 205511073 ZNF143 GTRD no Epithelial (MCF-7) 107862315
chr1 205510162 205511170 ZNF143 GTRD no Epithelial (MCF-7) 21372075
chr1 205510162 205511170 ZNF143 GTRD no Epithelial (MCF-7) 107862316
chr1 205510183 205510807 ZNF274 GTRD no Blood (GM12878) 107862317
chr1 205510221 205510893 TCF7L2 GTRD no Colon (HCT116) 107862318
chr1 205510260 205510281 ZNF263 JASPAR yes 34768989
chr1 205510260 205510281 ZNF263 JASPAR yes 118441734
chr1 205510262 205510283 ZNF263 JASPAR yes 34768990
chr1 205510262 205510283 ZNF263 JASPAR yes 118441735
chr1 205510267 205510288 ZNF263 JASPAR yes 34768992
chr1 205510267 205510288 ZNF263 JASPAR yes 118441737
chr1 205510268 205510289 ZNF263 JASPAR yes 34768993
chr1 205510268 205510289 ZNF263 JASPAR yes 118441738
chr1 205510274 205510295 ZNF263 JASPAR yes 34768994
chr1 205510274 205510295 ZNF263 JASPAR yes 118441739
chr1 205510278 205510288 SP1 JASPAR yes 34768995
chr1 205510278 205510288 SP1 JASPAR yes 118441740
Genes associated with rs540448828[chr1:205510279], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More