EnhancerDB
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  3. rs540496562[chr17:39693066]
Enhancers that have rs540496562[chr17:39693066]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39688905 39708275 enh17150
Bone Marrow (K562) Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Stomach Epithelial (MCF-7) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Breast Muscle (Myoblast) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs540496562[chr17:39693066]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39692759 39693126 ZNF143 GTRD no Epithelial (MCF-7) 21757650
chr17 39693049 39693066 RXRA JASPAR yes 54262210
chr17 39693058 39693067 ZEB1 JASPAR yes 54262212
chr17 39693061 39693066 USF2 TRANSFAC yes 54262213
chr17 39693066 39693071 ETS2 TRANSFAC yes 54262214
Genes associated with rs540496562[chr17:39693066], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More