EnhancerDB
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  3. rs540533508[chr17:53522550]
Enhancers that have rs540533508[chr17:53522550]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs540533508[chr17:53522550]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53522154 53522770 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772634
chr17 53522207 53522751 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772635
chr17 53522255 53522819 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772636
chr17 53522404 53522764 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772638
chr17 53522405 53522695 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772639
chr17 53522416 53522556 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772640
chr17 53522431 53522695 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772642
chr17 53522453 53522663 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772643
chr17 53522480 53522664 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772644
chr17 53522515 53522735 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772645
chr17 53522538 53522556 SRF JASPAR yes 54851734
chr17 53522546 53522561 TFAP2A JASPAR yes 54851736
chr17 53522546 53522561 TFAP2C JASPAR yes 54851737
chr17 53522548 53522560 TFAP2A JASPAR yes 54851738
chr17 53522548 53522560 TFAP2B JASPAR yes 54851739
chr17 53522548 53522560 TFAP2C JASPAR yes 54851740
chr17 53522548 53522563 TFAP2A JASPAR yes 54851741
chr17 53522548 53522563 TFAP2C JASPAR yes 54851742
chr17 53522549 53522560 TFAP2A JASPAR yes 54851743
chr17 53522549 53522560 TFAP2B JASPAR yes 54851744
Genes associated with rs540533508[chr17:53522550], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More