EnhancerDB
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  3. rs540543952[chr16:85187464]
Enhancers that have rs540543952[chr16:85187464]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 85155669 85199515 enh16863
Astrocyte Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr16 85187292 85187617 vista23283
VISTA
Transcript factors that have rs540543952[chr16:85187464]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 85186712 85188408 TCF7L2 GTRD no Colon (HCT116) 108213457
chr16 85186807 85187506 ZBTB33 GTRD no Brain (SK-N-SH) 21720413
chr16 85186807 85187506 ZBTB33 GTRD no Brain (SK-N-SH) 108213458
chr16 85186822 85188372 ZNF143 GTRD no Epithelial (MCF-7) 21720414
chr16 85186822 85188372 ZNF143 GTRD no Epithelial (MCF-7) 108213459
chr16 85186850 85187779 ZNF143 GTRD no Epithelial (MCF-7) 21720415
chr16 85186850 85187779 ZNF143 GTRD no Epithelial (MCF-7) 108213460
chr16 85186859 85188403 TCF7L2 GTRD no Colon (HCT116) 108213461
chr16 85186862 85188373 TCF7L2 GTRD no Colon (HCT116) 108213462
chr16 85186866 85188425 TCF7L2 GTRD no Colon (HCT116) 108213463
chr16 85186883 85188012 ZNF274 GTRD no Bone Marrow (K562) 108213464
chr16 85186891 85188369 ZNF143 GTRD no Epithelial (MCF-7) 21720416
chr16 85186891 85188369 ZNF143 GTRD no Epithelial (MCF-7) 108213465
chr16 85186991 85187521 ZBTB33 GTRD no Brain (SK-N-SH) 21720418
chr16 85186991 85187521 ZBTB33 GTRD no Brain (SK-N-SH) 108213467
chr16 85187022 85187467 ZBTB33 GTRD no Brain (SK-N-SH) 21720419
chr16 85187022 85187467 ZBTB33 GTRD no Brain (SK-N-SH) 108213468
chr16 85187080 85187675 ZNF274 GTRD no Bone Marrow (K562) 108213469
chr16 85187151 85187671 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108213470
chr16 85187253 85187876 ZNF274 GTRD no Liver (HepG2) 21720420
chr16 85187253 85187876 ZNF274 GTRD no Liver (HepG2) 108213471
chr16 85187303 85188018 ZNF274 GTRD no Bone Marrow (K562) 108213472
chr16 85187327 85187607 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108213473
chr16 85187353 85187595 EBF1 UCSC Txn Factor no Conserved 108213474
chr16 85187353 85187595 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108213475
chr16 85187368 85187813 ZNF274 GTRD no Bone Marrow (K562) 108213476
chr16 85187390 85187798 ZNF274 GTRD no Bone Marrow (K562) 108213477
chr16 85187401 85187791 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 108213478
chr16 85187403 85187847 ZNF274 GTRD no Liver (HepG2) 21720421
chr16 85187403 85187847 ZNF274 GTRD no Liver (HepG2) 108213479
chr16 85187404 85187939 ZNF274 GTRD no Bone Marrow (K562) 108213480
chr16 85187433 85187921 ZNF274 GTRD no Liver (HepG2) 21720422
chr16 85187433 85187921 ZNF274 GTRD no Liver (HepG2) 108213481
chr16 85187453 85187468 MEF2C JASPAR yes 12026233
chr16 85187453 85187468 MEF2C JASPAR yes 49407065
chr16 85187454 85187466 MEF2B JASPAR yes 12026234
chr16 85187454 85187466 MEF2D JASPAR yes 12026235
chr16 85187454 85187466 MEF2B JASPAR yes 49407066
chr16 85187454 85187466 MEF2D JASPAR yes 49407067
chr16 85187464 85187475 E2F6 JASPAR yes 12026238
chr16 85187464 85187475 E2F6 JASPAR yes 49407070
Genes associated with rs540543952[chr16:85187464], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More