EnhancerDB
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  3. rs540580558[chr16:88994618]
Enhancers that have rs540580558[chr16:88994618]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 88969235 88997095 enh16904
Bone Marrow (K562) Epithelial (MCF-7) Prostate (RWPE1) Esophagus Astrocyte Stomach Muscle (A673) Placenta Colon (HCT116) Muscle (Myoblast) Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Thymus Heart
Transcript factors that have rs540580558[chr16:88994618]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 88990176 88996491 ZNF274 GTRD no Bone Marrow (K562) 21737354
chr16 88990176 88996491 ZNF274 GTRD no Bone Marrow (K562) 108224323
chr16 88990177 88996763 ZNF274 GTRD no Bone Marrow (K562) 21737355
chr16 88990177 88996763 ZNF274 GTRD no Bone Marrow (K562) 108224324
chr16 88990381 88996100 ZNF274 GTRD no Bone Marrow (K562) 21737357
chr16 88990381 88996100 ZNF274 GTRD no Bone Marrow (K562) 108224326
chr16 88991742 88994817 ZNF274 GTRD no Bone Marrow (K562) 21737409
chr16 88991742 88994817 ZNF274 GTRD no Bone Marrow (K562) 108224409
chr16 88991796 88994659 TCF7L2 GTRD no Colon (HCT116) 21737426
chr16 88991796 88994659 TCF7L2 GTRD no Colon (HCT116) 108224429
chr16 88991931 88994679 ZNF274 GTRD no Bone Marrow (K562) 21737431
chr16 88991931 88994679 ZNF274 GTRD no Bone Marrow (K562) 108224436
chr16 88991933 88994638 TCF7L2 GTRD no Colon (HCT116) 21737432
chr16 88991933 88994638 TCF7L2 GTRD no Colon (HCT116) 108224437
chr16 88991961 88994803 TCF7L2 GTRD no Colon (HCT116) 21737434
chr16 88991961 88994803 TCF7L2 GTRD no Colon (HCT116) 108224439
chr16 88994600 88994620 RREB1 JASPAR yes 12310748
Genes associated with rs540580558[chr16:88994618], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More