EnhancerDB
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  3. rs540607409[chr19:6254992]
Enhancers that have rs540607409[chr19:6254992]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 6230503 6255735 enh4983
Bone Marrow (K562) Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Brain (SK-N-MC) Brain (SK-N-SH) Esophagus Astrocyte Bone (Osteoblast) Blood (OCI-LY7) Blood (GM12878) Stomach Muscle (A673) Thyroid Blood (Karpas-422) Muscle (Myoblast) Pancreas Uterus Thymus Heart
Transcript factors that have rs540607409[chr19:6254992]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 6254975 6254995 RREB1 JASPAR yes 112265070
chr19 6254982 6255003 IRF1 JASPAR yes 112265076
chr19 6254983 6255003 RREB1 JASPAR yes 112265077
chr19 6254986 6255001 FOXP1 JASPAR yes 112265078
chr19 6254986 6255007 IRF1 JASPAR yes 112265079
chr19 6254987 6255002 FOXP1 JASPAR yes 112265080
chr19 6254987 6255008 IRF1 JASPAR yes 112265081
chr19 6254988 6255003 FOXP1 JASPAR yes 112265082
chr19 6254988 6255009 IRF1 JASPAR yes 112265083
chr19 6254989 6255004 FOXP1 JASPAR yes 112265084
chr19 6254989 6255010 IRF1 JASPAR yes 112265085
chr19 6254990 6255005 FOXP1 JASPAR yes 112265086
chr19 6254992 6255007 FOXP1 JASPAR yes 112265087
Genes associated with rs540607409[chr19:6254992], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More