EnhancerDB
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  3. rs540824739[chr16:29616512]
Enhancers that have rs540824739[chr16:29616512]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 29603958 29628535 enh3968
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Lung (A549) Pancreas (Panc1) Thymus Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Heart
Transcript factors that have rs540824739[chr16:29616512]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 29616015 29616571 ZNF274 GTRD no Liver (HepG2) 21702918
chr16 29616173 29616581 ZNF274 GTRD no Liver (HepG2) 21702928
chr16 29616188 29616569 ZNF274 GTRD no Liver (HepG2) 21702929
chr16 29616497 29616518 ZNF263 JASPAR yes 10267599
chr16 29616500 29616521 ZNF263 JASPAR yes 10267601
chr16 29616504 29616518 PLAG1 JASPAR yes 10267602
chr16 29616507 29616522 ZIC3 JASPAR yes 10267603
chr16 29616507 29616522 ZIC4 JASPAR yes 10267604
chr16 29616508 29616522 GLIS2 JASPAR yes 10267605
chr16 29616508 29616522 ZIC1 JASPAR yes 10267606
chr16 29616510 29616520 ZNF740 JASPAR yes 10267607
chr16 29616511 29616521 SP1 JASPAR yes 10267608
chr16 29616511 29616521 ZNF740 JASPAR yes 10267609
chr16 29616512 29616522 ZNF740 JASPAR yes 10267610
Genes associated with rs540824739[chr16:29616512], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More
chr16 28857921 28885526 + SH2B1 ENSG00000178188.10 28857921 730986 Thyroid 0.120755 14691
chr16 29467127 29476300 + SULT1A4 ENSG00000213648.6 29467127 140212 Liver 0.383038 14703