EnhancerDB
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  3. rs540828146[chr17:76958005]
Enhancers that have rs540828146[chr17:76958005]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 76939164 76975154 enh17420
Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Ovary Astrocyte Bone (Osteoblast) Placenta Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Muscle (Myotube) Uterus Stomach
Transcript factors that have rs540828146[chr17:76958005]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 76957067 76958045 TCF7L2 GTRD no Colon (HCT116) 21795543
chr17 76957587 76959333 TCF7L2 GTRD no Colon (HCT116) 21795544
chr17 76957917 76958573 ZBTB33 GTRD no Brain (SK-N-SH) 21795545
chr17 76958001 76958014 SMAD2 JASPAR yes 56194074
chr17 76958004 76958014 TBR1 JASPAR yes 56194075
chr17 76958005 76958015 TBX21 JASPAR yes 56194076
Genes associated with rs540828146[chr17:76958005], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More