EnhancerDB
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  3. rs540896979[chr1:202005876]
Enhancers that have rs540896979[chr1:202005876]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201996265 202020435 enh12533
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Epithelial (MCF-7) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs540896979[chr1:202005876]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202005273 202006678 ZNF143 GTRD no Epithelial (MCF-7) 21365534
chr1 202005343 202013233 ZNF274 GTRD no Cervix (HeLa-S3) 21365535
chr1 202005343 202013233 ZNF274 GTRD no Cervix (HeLa-S3) 107857423
chr1 202005488 202006663 ZNF274 GTRD no Cervix (HeLa-S3) 21365536
chr1 202005522 202006664 ZNF143 GTRD no Epithelial (MCF-7) 21365537
chr1 202005723 202006444 ZNF143 GTRD no Epithelial (MCF-7) 21365538
chr1 202005749 202008651 ZNF274 GTRD no Bone Marrow (K562) 107857424
chr1 202005753 202006408 ZNF274 GTRD no Liver (HepG2) 21365539
chr1 202005756 202006422 ZNF274 GTRD no Cervix (HeLa-S3) 21365540
chr1 202005770 202006564 ZNF274 GTRD no Liver (HepG2) 21365541
chr1 202005795 202006444 ZNF274 GTRD no Liver (HepG2) 21365542
chr1 202005807 202006420 ZNF274 GTRD no Liver (HepG2) 21365543
chr1 202005810 202006519 ZNF274 GTRD no Liver (HepG2) 21365544
chr1 202005843 202006560 ZNF143 GTRD no Epithelial (MCF-7) 21365545
chr1 202005843 202006562 ZNF274 GTRD no Liver (HepG2) 21365546
chr1 202005848 202006460 ZNF143 GTRD no Epithelial (MCF-7) 21365547
chr1 202005873 202005881 FOXO3 JASPAR yes 34544529
chr1 202005874 202005889 FOXP1 JASPAR yes 34544530
chr1 202005876 202005896 RREB1 JASPAR yes 34544531
chr1 202005876 202006527 ZNF143 GTRD no Epithelial (MCF-7) 21365548
Genes associated with rs540896979[chr1:202005876], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More