EnhancerDB
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  3. rs541182909[chr17:53533349]
Enhancers that have rs541182909[chr17:53533349]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs541182909[chr17:53533349]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53533347 53533356 ZEB1 JASPAR yes 54853551
chr17 53533348 53533358 ID4 JASPAR yes 54853552
chr17 53533348 53533358 TCF3 JASPAR yes 54853553
chr17 53533348 53533358 TCF4 JASPAR yes 54853554
chr17 53533349 53533358 SNAI2 JASPAR yes 54853555
Genes associated with rs541182909[chr17:53533349], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More