EnhancerDB
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  3. rs541218406[chr16:15989609]
Enhancers that have rs541218406[chr16:15989609]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 15989540 15998735 enh31713
Bone Marrow (K562) Skin (Keratinocyte) Prostate (PC-3) Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Esophagus Astrocyte Blood (GM12878) Stomach Colon (HCT116) Peripheral Blood (MM.1S) Lung (PC-9) Pancreas Pancreas (Panc1) Epithelial (MCF-7)
Transcript factors that have rs541218406[chr16:15989609]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 15987066 15990124 ZNF274 GTRD no Bone Marrow (K562) 21693776
chr16 15987477 15989971 ZNF274 GTRD no Bone Marrow (K562) 21693777
chr16 15988783 15989755 P63 GTRD no Skin (Keratinocyte) 21693779
chr16 15988847 15989749 P63 GTRD no Skin (Keratinocyte) 21693780
chr16 15988859 15989746 P63 GTRD no Skin (Keratinocyte) 21693781
chr16 15988910 15989640 TCF7L2 GTRD no Colon (HCT116) 21693782
chr16 15988966 15989755 TCF7L2 GTRD no Colon (HCT116) 21693783
chr16 15989005 15989840 ZNF274 GTRD no Bone Marrow (K562) 21693784
chr16 15989089 15989784 TCF7L2 GTRD no Colon (HCT116) 21693785
chr16 15989108 15989731 P63 GTRD no Skin (Keratinocyte) 21693786
chr16 15989108 15989766 TCF7L2 GTRD no Colon (HCT116) 21693787
chr16 15989123 15989697 TCF7L2 GTRD no Colon (HCT116) 21693788
chr16 15989129 15989634 ZNF274 GTRD no Bone Marrow (K562) 21693789
chr16 15989211 15989879 TCF7L2 GTRD no Colon (HCT116) 21693791
chr16 15989246 15990085 ZNF274 GTRD no Bone Marrow (K562) 21693793
chr16 15989607 15989622 FOXP1 JASPAR yes 9748458
chr16 15989608 15989623 FOXP1 JASPAR yes 9748459
chr16 15989609 15989624 FOXP1 JASPAR yes 9748460
chr16 15989609 15989630 IRF1 JASPAR yes 9748461
Genes associated with rs541218406[chr16:15989609], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More