EnhancerDB
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  3. rs541335499[chr16:1342087]
Enhancers that have rs541335499[chr16:1342087]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr16 1326605 1349655 enh16494
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs541335499[chr16:1342087]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 21684544
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 108171314
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 108171315
chr16 1337449 1345452 ZNF143 GTRD no Epithelial (MCF-7) 108171316
chr16 1340801 1345571 TCF7L2 GTRD no Colon (HCT116) 21684584
chr16 1340801 1345571 TCF7L2 GTRD no Colon (HCT116) 108171336
chr16 1340801 1345571 TCF7L2 GTRD no Colon (HCT116) 108171337
chr16 1340953 1344322 TCF7L2 GTRD no Colon (HCT116) 21684587
chr16 1340953 1344322 TCF7L2 GTRD no Colon (HCT116) 108171341
chr16 1341122 1342220 ZNF274 GTRD no Bone Marrow (K562) 108171346
chr16 1341352 1344675 ZNF274 GTRD no Blood (GM12878) 108171350
chr16 1341352 1344675 ZNF274 GTRD no Blood (GM12878) 108171351
chr16 1341745 1344089 ZNF143 GTRD no Epithelial (MCF-7) 21684591
chr16 1341754 1344034 TCF7L2 GTRD no Colon (HCT116) 21684592
chr16 1341814 1344359 ZNF274 GTRD no Bone Marrow (K562) 108171352
chr16 1341902 1345076 ZNF143 GTRD no Epithelial (MCF-7) 21684593
chr16 1341902 1345076 ZNF143 GTRD no Epithelial (MCF-7) 108171353
chr16 1341961 1344347 ZNF143 GTRD no Epithelial (MCF-7) 21684594
chr16 1341961 1344347 ZNF143 GTRD no Epithelial (MCF-7) 108171354
chr16 1342066 1342087 ZNF263 JASPAR yes 9148786
chr16 1342067 1342088 ZNF263 JASPAR yes 9148787
chr16 1342069 1342090 IRF1 JASPAR yes 9148789
chr16 1342070 1342091 ZNF263 JASPAR yes 9148790
chr16 1342075 1342096 IRF1 JASPAR yes 9148792
chr16 1342079 1342100 IRF1 JASPAR yes 9148793
chr16 1342081 1342088 SPIB JASPAR yes 9148794
chr16 1342081 1342102 IRF1 JASPAR yes 9148795
chr16 1342082 1342103 IRF1 JASPAR yes 9148796
chr16 1342083 1342104 IRF1 JASPAR yes 9148797
chr16 1342084 1342099 FOXP1 JASPAR yes 9148798
chr16 1342084 1342105 IRF1 JASPAR yes 9148799
chr16 1342085 1342106 IRF1 JASPAR yes 9148800
chr16 1342086 1342101 FOXP1 JASPAR yes 9148801
chr16 1342086 1342107 IRF1 JASPAR yes 9148802
chr16 1342087 1342102 FOXP1 JASPAR yes 9148803
chr16 1342087 1342108 IRF1 JASPAR yes 9148804
Genes associated with rs541335499[chr16:1342087], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More