EnhancerDB
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  3. rs541552984[chr1:229388954]
Enhancers that have rs541552984[chr1:229388954]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 229386846 229398355 enh47306
Liver (HepG2) Cervix (HeLa-S3) Prostate (RWPE1) Blood (T-cell) Peripheral Blood (MM.1S) Neural Stem Cells (H9) Thymus Stomach
chr1 229388898 229389111 vista5466
VISTA
Transcript factors that have rs541552984[chr1:229388954]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 229388397 229389892 ZNF274 GTRD no Cervix (HeLa-S3) 21390885
chr1 229388397 229389892 ZNF274 GTRD no Cervix (HeLa-S3) 107878038
chr1 229388719 229389536 ZNF274 GTRD no Cervix (HeLa-S3) 21390886
chr1 229388719 229389536 ZNF274 GTRD no Cervix (HeLa-S3) 107878039
chr1 229388728 229389244 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390887
chr1 229388728 229389244 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878040
chr1 229388749 229389718 ZBTB33 GTRD no Lung (A549) 107878041
chr1 229388778 229389780 ZNF274 GTRD no Cervix (HeLa-S3) 21390888
chr1 229388778 229389780 ZNF274 GTRD no Cervix (HeLa-S3) 107878042
chr1 229388793 229389767 ZNF274 GTRD no Cervix (HeLa-S3) 21390889
chr1 229388793 229389767 ZNF274 GTRD no Cervix (HeLa-S3) 107878043
chr1 229388801 229389331 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390890
chr1 229388801 229389331 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878044
chr1 229388835 229389490 ZBTB33 GTRD no Lung (A549) 107878045
chr1 229388861 229389745 ZNF274 GTRD no Cervix (HeLa-S3) 21390891
chr1 229388861 229389745 ZNF274 GTRD no Cervix (HeLa-S3) 107878046
chr1 229388871 229389211 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390892
chr1 229388871 229389211 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107878047
chr1 229388884 229389395 ZNF274 GTRD no Cervix (HeLa-S3) 21390893
chr1 229388884 229389395 ZNF274 GTRD no Cervix (HeLa-S3) 107878048
chr1 229388887 229389543 ZNF217 ENCODE Uniform TFBS no Epithelial (MCF-7) 107878049
chr1 229388895 229389435 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107878050
chr1 229388895 229389718 ZNF274 GTRD no Cervix (HeLa-S3) 21390894
chr1 229388895 229389718 ZNF274 GTRD no Cervix (HeLa-S3) 107878051
chr1 229388897 229389716 ZNF274 GTRD no Bone Marrow (K562) 107878052
chr1 229388901 229389281 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390895
chr1 229388901 229389281 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107878053
chr1 229388901 229389638 ZNF274 GTRD no Cervix (HeLa-S3) 21390896
chr1 229388901 229389638 ZNF274 GTRD no Cervix (HeLa-S3) 107878054
chr1 229388907 229389588 ZNF274 GTRD no Cervix (HeLa-S3) 21390897
chr1 229388907 229389588 ZNF274 GTRD no Cervix (HeLa-S3) 107878055
chr1 229388917 229389313 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390898
chr1 229388917 229389313 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878056
chr1 229388922 229389322 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21390899
chr1 229388922 229389322 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 107878057
chr1 229388922 229389333 TEF1 GTRD no Bone (Osteoblast) 107878058
chr1 229388924 229389655 TEF1 GTRD no Bone (Osteoblast) 107878059
chr1 229388926 229389811 ZNF274 GTRD no Cervix (HeLa-S3) 21390900
chr1 229388926 229389811 ZNF274 GTRD no Cervix (HeLa-S3) 107878060
chr1 229388931 229389335 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390901
chr1 229388931 229389335 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878061
chr1 229388932 229389526 ZBTB33 GTRD no Brain (SK-N-SH) 107878062
chr1 229388940 229389444 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390902
chr1 229388940 229389444 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878063
chr1 229388940 229389563 TCF7L2 UCSC Txn Factor no Conserved 107878064
chr1 229388943 229389459 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21390903
chr1 229388943 229389459 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107878065
chr1 229388945 229388966 ZNF263 JASPAR yes 35979122
chr1 229388945 229388966 ZNF263 JASPAR yes 118476253
chr1 229388946 229388967 ZNF263 JASPAR yes 35979123
chr1 229388946 229388967 ZNF263 JASPAR yes 118476254
chr1 229388948 229388954 SP1 TRANSFAC yes 35979124
chr1 229388948 229388954 SP1 TRANSFAC yes 118476255
chr1 229388948 229388958 SP1 JASPAR yes 35979125
chr1 229388948 229388958 SP1 JASPAR yes 118476256
chr1 229388950 229388955 SP1 TRANSFAC yes 35979126
chr1 229388950 229388955 SP1 TRANSFAC yes 118476257
Genes associated with rs541552984[chr1:229388954], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More