EnhancerDB
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Enhancers that have rs541596601[chr17:80466449]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80448407 80467804 enh4648
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs541596601[chr17:80466449]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80465637 80466835 ZNF143 GTRD no Epithelial (MCF-7) 21800708
chr17 80465648 80466877 ZNF143 GTRD no Epithelial (MCF-7) 21800710
chr17 80466185 80466900 TCF7L2 GTRD no Colon (HCT116) 21800713
chr17 80466220 80466881 ZNF143 GTRD no Epithelial (MCF-7) 21800715
chr17 80466235 80466903 TCF7L2 GTRD no Colon (HCT116) 21800716
chr17 80466257 80466540 ZNF274 GTRD no Bone Marrow (K562) 21800717
chr17 80466277 80466484 ZNF274 GTRD no Bone Marrow (K562) 21800718
chr17 80466439 80466450 ESRRA JASPAR yes 56369426
chr17 80466439 80466450 ESRRB JASPAR yes 56369427
chr17 80466439 80466452 NR2F1 JASPAR yes 56369428
chr17 80466441 80466449 NR4A2 JASPAR yes 56369429
Genes associated with rs541596601[chr17:80466449], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More