EnhancerDB
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  3. rs541826680[chr17:53510357]
Enhancers that have rs541826680[chr17:53510357]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 53505736 53535115 enh4475
Brain (SK-N-MC) Liver Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs541826680[chr17:53510357]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 53510049 53510425 ZNF274 ENCODE Uniform TFBS no Liver (HepG2) 21772540
chr17 53510080 53510670 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108273027
chr17 53510311 53510815 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 108273028
chr17 53510347 53510357 ALX3 JASPAR yes 54849764
chr17 53510347 53510357 GSX2 JASPAR yes 54849765
chr17 53510347 53510357 MIXL1 JASPAR yes 54849766
chr17 53510355 53510366 DMRT3 JASPAR yes 54849774
Genes associated with rs541826680[chr17:53510357], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More