EnhancerDB
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  3. rs542085574[chr3:15340990]
Enhancers that have rs542085574[chr3:15340990]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 15321725 15344764 enh20375
Bone Marrow (K562) Astrocyte Colon (HCT116) Adrenal Embryonic Stem Cell Line (H1-hESC) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Prostate (RWPE1) Heart
chr3 15340806 15341141 vista40087
VISTA
Transcript factors that have rs542085574[chr3:15340990]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 15340979 15340995 SOX4 JASPAR yes 653087
chr3 15340979 15340995 SOX4 JASPAR yes 70943447
chr3 15340980 15340995 SOX21 JASPAR yes 653089
chr3 15340980 15340995 SOX21 JASPAR yes 70943449
chr3 15340982 15340993 PHOX2A JASPAR yes 653091
chr3 15340982 15340993 PROP1 JASPAR yes 653092
chr3 15340982 15340993 PHOX2A JASPAR yes 70943451
chr3 15340982 15340993 PROP1 JASPAR yes 70943452
chr3 15340983 15341004 IRF1 JASPAR yes 653093
chr3 15340983 15341004 IRF1 JASPAR yes 70943453
chr3 15340984 15341005 IRF1 JASPAR yes 653094
chr3 15340984 15341005 IRF1 JASPAR yes 70943454
chr3 15340985 15341006 IRF1 JASPAR yes 653095
chr3 15340985 15341006 IRF1 JASPAR yes 70943455
chr3 15340987 15341008 IRF1 JASPAR yes 653096
chr3 15340987 15341008 IRF1 JASPAR yes 70943456
chr3 15340988 15341009 IRF1 JASPAR yes 653097
chr3 15340988 15341009 IRF1 JASPAR yes 70943457
chr3 15340989 15341004 FOXP1 JASPAR yes 653098
chr3 15340989 15341004 FOXP1 JASPAR yes 70943458
chr3 15340989 15341010 IRF1 JASPAR yes 653099
chr3 15340989 15341010 IRF1 JASPAR yes 70943459
chr3 15340990 15341005 FOXP1 JASPAR yes 653100
chr3 15340990 15341005 FOXP1 JASPAR yes 70943460
chr3 15340990 15341011 IRF1 JASPAR yes 653101
chr3 15340990 15341011 IRF1 JASPAR yes 70943461
Genes associated with rs542085574[chr3:15340990], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More