EnhancerDB
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  3. rs542123725[chr1:228960409]
Enhancers that have rs542123725[chr1:228960409]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 228960005 228980255 enh12752
Prostate (PC-3) Liver (HepG2) Epithelial (MCF-7) Kidney Large Intestine Prostate (RWPE1) Esophagus Astrocyte Liver Cervix (HeLa-S3) Stomach Placenta Colon (HCT116) Breast Thyroid Pancreas Pancreas (Panc1) Muscle (Myotube) Uterus Heart
Transcript factors that have rs542123725[chr1:228960409]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 228960396 228960415 RFX2 JASPAR yes 35932180
chr1 228960402 228960412 HOXA13 JASPAR yes 35932181
chr1 228960402 228960412 HOXB13 JASPAR yes 35932182
chr1 228960402 228960412 HOXD13 JASPAR yes 35932183
chr1 228960402 228960413 HOXA10 JASPAR yes 35932184
chr1 228960403 228960412 CDX1 JASPAR yes 35932185
chr1 228960403 228960414 CDX2 JASPAR yes 35932186
Genes associated with rs542123725[chr1:228960409], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More