EnhancerDB
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Enhancers that have rs542156880[chr1:212659182]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 212648565 212664795 enh12641
Astrocyte Colon (HCT116) Pancreas Uterus Stomach Epithelial (MCF-7) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1)
chr1 212659054 212659720 vista5004
VISTA
Transcript factors that have rs542156880[chr1:212659182]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 212658924 212659648 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107868450
chr1 212658949 212659349 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 107868451
chr1 212658955 212659231 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21378858
chr1 212658955 212659231 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107868452
chr1 212659079 212659739 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21378859
chr1 212659079 212659739 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107868453
chr1 212659150 212659806 ZBTB33 ENCODE Uniform TFBS no Lung (A549) 107868454
chr1 212659160 212659670 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21378860
chr1 212659160 212659670 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107868455
chr1 212659174 212659638 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21378861
chr1 212659174 212659638 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107868456
chr1 212659180 212659195 FOXA1 JASPAR yes 35128988
chr1 212659180 212659195 FOXA1 JASPAR yes 118453138
chr1 212659181 212659577 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21378862
chr1 212659181 212659577 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 107868457
Genes associated with rs542156880[chr1:212659182], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More