EnhancerDB
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  3. rs542193640[chr19:558614]
Enhancers that have rs542193640[chr19:558614]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 552765 561015 enh17834
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Prostate (RWPE1) Ovary Lung Stomach Muscle (A673) Placenta Colon (HCT116) Uterus Heart
Transcript factors that have rs542193640[chr19:558614]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 558400 559490 TCF7L2 GTRD no Colon (HCT116) 21829656
chr19 558409 560037 TCF7L2 GTRD no Colon (HCT116) 21829657
chr19 558441 559406 TCF7L2 GTRD no Colon (HCT116) 21829658
chr19 558480 559393 ZNF274 GTRD no Cervix (HeLa-S3) 21829659
chr19 558482 559445 ZNF274 GTRD no Cervix (HeLa-S3) 21829660
chr19 558501 559413 ZNF274 GTRD no Bone Marrow (K562) 21829661
chr19 558506 559439 ZNF274 GTRD no Liver (HepG2) 21829662
chr19 558510 559645 ZNF274 GTRD no Liver (HepG2) 21829663
chr19 558533 559363 ZNF274 GTRD no Liver (HepG2) 21829664
chr19 558537 559306 ZNF274 GTRD no Liver (HepG2) 21829665
chr19 558542 559311 ZNF143 GTRD no Epithelial (MCF-7) 21829666
chr19 558544 559347 ZNF143 GTRD no Epithelial (MCF-7) 21829667
chr19 558547 559429 ZNF274 GTRD no Liver (HepG2) 21829668
chr19 558563 558967 ZNF274 ENCODE Uniform TFBS no Bone Marrow (K562) 21829669
chr19 558572 559322 ZNF143 GTRD no Epithelial (MCF-7) 21829670
chr19 558572 559408 ZNF274 GTRD no Liver (HepG2) 21829671
chr19 558591 559949 ZNF274 GTRD no Liver (HepG2) 21829672
chr19 558602 559220 ZNF274 GTRD no Liver (HepG2) 21829673
chr19 558610 558622 FOXC2 JASPAR yes 111967443
Genes associated with rs542193640[chr19:558614], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More