EnhancerDB
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  3. rs542217460[chr17:80256737]
Enhancers that have rs542217460[chr17:80256737]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 80234785 80270055 enh4646
Bone Marrow (K562) Brain (SK-N-MC) Liver Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673)
Transcript factors that have rs542217460[chr17:80256737]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 80254696 80256801 P63 GTRD no Skin (Keratinocyte) 108311675
chr17 80254696 80256801 P63 GTRD no Skin (Keratinocyte) 108311676
chr17 80254831 80256751 POLR2A UCSC Txn Factor no Conserved 108311681
chr17 80254831 80256751 POLR2A UCSC Txn Factor no Conserved 108311682
chr17 80256283 80257456 TCF7L2 GTRD no Colon (HCT116) 21799381
chr17 80256283 80257456 TCF7L2 GTRD no Colon (HCT116) 108311916
chr17 80256288 80258242 ZNF274 GTRD no Bone Marrow (K562) 21799382
chr17 80256288 80258242 ZNF274 GTRD no Bone Marrow (K562) 108311917
chr17 80256349 80260494 ZNF274 GTRD no Cervix (HeLa-S3) 21799383
chr17 80256349 80260494 ZNF274 GTRD no Cervix (HeLa-S3) 108311918
chr17 80256361 80257522 ZNF274 GTRD no Bone Marrow (K562) 21799384
chr17 80256361 80257522 ZNF274 GTRD no Bone Marrow (K562) 108311919
chr17 80256422 80258239 ZBTB33 GTRD no Lung (A549) 108311920
chr17 80256631 80257027 ZNF274 GTRD no Bone Marrow (K562) 21799385
chr17 80256631 80257039 ZNF274 GTRD no Bone Marrow (K562) 21799386
chr17 80256708 80257088 ZNF274 GTRD no Bone Marrow (K562) 21799387
chr17 80256710 80257453 ZNF274 GTRD no Bone Marrow (K562) 21799388
chr17 80256711 80256976 ZNF274 GTRD no Bone Marrow (K562) 21799389
chr17 80256727 80256740 TFAP2A JASPAR yes 56359921
chr17 80256733 80256743 SP1 JASPAR yes 56359922
chr17 80256734 80256744 SP1 JASPAR yes 56359923
chr17 80256735 80256739 LFA1 TRANSFAC yes 56359924
Genes associated with rs542217460[chr17:80256737], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More