EnhancerDB
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  3. rs542260788[chr10:25180846]
Enhancers that have rs542260788[chr10:25180846]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr10 25169345 25193458 enh13071
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Adrenal Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Spleen Muscle (Myotube) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs542260788[chr10:25180846]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr10 25180839 25180848 NKX3-2 JASPAR yes 126101673
chr10 25180839 25180849 NKX2-3 JASPAR yes 126101674
chr10 25180840 25180848 ISL2 JASPAR yes 126101675
chr10 25180845 25180848 MYB TRANSFAC yes 126101676
Genes associated with rs542260788[chr10:25180846], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More