EnhancerDB
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  3. rs542325457[chr12:96631595]
Enhancers that have rs542325457[chr12:96631595]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 96582645 96638775 enh14921
Liver Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Epithelial (MCF-7) Stomach Brain (SK-N-SH) Bone (Osteoblast) Blood (OCI-LY7) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr12 96631530 96631765 vista14558
VISTA
Transcript factors that have rs542325457[chr12:96631595]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 96631477 96631921 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21567656
chr12 96631477 96631921 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108053202
chr12 96631513 96631869 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 21567657
chr12 96631513 96631869 TAF1 ENCODE Uniform TFBS no Brain (SK-N-SH) 108053203
chr12 96631546 96631806 STAT3 UCSC Txn Factor no Conserved 108053204
chr12 96631580 96631765 FOS UCSC Txn Factor no Conserved 108053205
chr12 96631586 96631597 FOXA1 JASPAR yes 82460855
chr12 96631586 96631597 FOXA1 JASPAR yes 123051675
Genes associated with rs542325457[chr12:96631595], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More