EnhancerDB
  1. Home
  2. SNP
  3. rs542404812[chr17:70355367]
Enhancers that have rs542404812[chr17:70355367]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 70352230 70433435 enh4580
Brain (SK-N-MC) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Epithelial (MCF-7) Stomach Skin (Keratinocyte) Brain (SK-N-SH) Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Blood (GM12878) Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs542404812[chr17:70355367]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 70355020 70355704 ZBTB33 GTRD no Brain (SK-N-SH) 21784267
chr17 70355070 70355685 ZNF274 GTRD no Blood (GM12878) 21784268
chr17 70355110 70355525 ZNF274 GTRD no Cervix (HeLa-S3) 21784269
chr17 70355136 70355671 ZBTB33 GTRD no Brain (SK-N-SH) 21784270
chr17 70355144 70355649 ZBTB33 GTRD no Brain (SK-N-SH) 21784271
chr17 70355151 70355544 ZNF143 GTRD no Epithelial (MCF-7) 21784272
chr17 70355165 70355565 ZNF274 GTRD no Cervix (HeLa-S3) 21784273
chr17 70355204 70355589 ZNF274 GTRD no Cervix (HeLa-S3) 21784274
chr17 70355231 70355561 ZBTB33 GTRD no Brain (SK-N-SH) 21784275
chr17 70355343 70355566 ZNF274 GTRD no Blood (GM12878) 21784276
chr17 70355366 70355376 HOXC10 JASPAR yes 55777356
chr17 70355366 70355376 HOXD11 JASPAR yes 55777357
chr17 70355366 70355377 HOXA10 JASPAR yes 55777358
chr17 70355366 70355377 HOXC11 JASPAR yes 55777359
chr17 70355366 70355377 HOXC12 JASPAR yes 55777360
chr17 70355366 70355377 HOXD12 JASPAR yes 55777361
chr17 70355367 70355377 GSX2 JASPAR yes 55777362
chr17 70355367 70355377 HOXB3 JASPAR yes 55777363
chr17 70355367 70355377 MEOX2 JASPAR yes 55777364
chr17 70355367 70355377 MNX1 JASPAR yes 55777365
Genes associated with rs542404812[chr17:70355367], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More