EnhancerDB
  1. Home
  2. SNP
  3. rs542461260[chr19:3388438]
Enhancers that have rs542461260[chr19:3388438]
Back to top
Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 3362205 3392371 enh17862
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Lung (A549) Thyroid Cervix (HeLa-S3) Blood (GM12878) Placenta Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs542461260[chr19:3388438]
Back to top
Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 3386265 3389100 TCF7L2 GTRD no Colon (HCT116) 21839142
chr19 3386265 3389100 TCF7L2 GTRD no Colon (HCT116) 108366435
chr19 3387135 3388928 ZNF143 GTRD no Epithelial (MCF-7) 21839143
chr19 3387135 3388928 ZNF143 GTRD no Epithelial (MCF-7) 108366436
chr19 3387338 3388621 TCF7L2 GTRD no Colon (HCT116) 21839144
chr19 3387338 3388621 TCF7L2 GTRD no Colon (HCT116) 108366437
chr19 3387358 3388469 TCF7L2 GTRD no Colon (HCT116) 21839146
chr19 3387358 3388469 TCF7L2 GTRD no Colon (HCT116) 108366439
chr19 3387418 3388580 ZNF274 GTRD no Cervix (HeLa-S3) 21839148
chr19 3387418 3388580 ZNF274 GTRD no Cervix (HeLa-S3) 108366441
chr19 3387450 3388454 ZBTB33 GTRD no Lung (A549) 21839150
chr19 3387450 3388454 ZBTB33 GTRD no Lung (A549) 108366443
chr19 3387460 3389114 TCF7L2 GTRD no Colon (HCT116) 21839151
chr19 3387460 3389114 TCF7L2 GTRD no Colon (HCT116) 108366444
chr19 3387486 3388588 ZBTB33 GTRD no Brain (SK-N-SH) 21839152
chr19 3387486 3388588 ZBTB33 GTRD no Brain (SK-N-SH) 108366445
chr19 3387498 3389063 TCF7L2 GTRD no Colon (HCT116) 21839157
chr19 3387498 3389063 TCF7L2 GTRD no Colon (HCT116) 108366450
chr19 3387512 3388471 ZBTB33 GTRD no Brain (SK-N-SH) 21839161
chr19 3387512 3388471 ZBTB33 GTRD no Brain (SK-N-SH) 108366454
chr19 3387519 3388497 ZBTB33 GTRD no Brain (SK-N-SH) 21839163
chr19 3387519 3388497 ZBTB33 GTRD no Brain (SK-N-SH) 108366456
chr19 3387532 3388460 ZNF143 GTRD no Epithelial (MCF-7) 21839169
chr19 3387532 3388460 ZNF143 GTRD no Epithelial (MCF-7) 108366462
chr19 3387532 3388593 ZBTB33 GTRD no Brain (SK-N-SH) 21839170
chr19 3387532 3388593 ZBTB33 GTRD no Brain (SK-N-SH) 108366463
chr19 3387534 3388633 ZBTB33 GTRD no Lung (A549) 21839172
chr19 3387534 3388633 ZBTB33 GTRD no Lung (A549) 108366465
chr19 3387538 3388585 ZBTB33 GTRD no Brain (SK-N-SH) 21839173
chr19 3387538 3388585 ZBTB33 GTRD no Brain (SK-N-SH) 108366466
chr19 3387548 3388561 ZBTB33 GTRD no Lung (A549) 21839177
chr19 3387548 3388561 ZBTB33 GTRD no Lung (A549) 108366470
chr19 3387557 3390833 ZNF274 GTRD no Cervix (HeLa-S3) 21839181
chr19 3387557 3390833 ZNF274 GTRD no Cervix (HeLa-S3) 108366474
chr19 3387586 3388441 ZNF143 GTRD no Epithelial (MCF-7) 21839188
chr19 3387586 3388441 ZNF143 GTRD no Epithelial (MCF-7) 108366481
chr19 3387592 3388479 ZNF143 GTRD no Epithelial (MCF-7) 21839189
chr19 3387592 3388479 ZNF143 GTRD no Epithelial (MCF-7) 108366482
chr19 3387592 3388492 ZBTB33 GTRD no Brain (SK-N-SH) 21839190
chr19 3387592 3388492 ZBTB33 GTRD no Brain (SK-N-SH) 108366483
chr19 3387595 3388450 TCF7L2 GTRD no Colon (HCT116) 21839191
chr19 3387595 3388450 TCF7L2 GTRD no Colon (HCT116) 108366484
chr19 3387722 3388673 ZBTB33 GTRD no Lung (A549) 21839230
chr19 3387722 3388673 ZBTB33 GTRD no Lung (A549) 108366524
chr19 3387747 3388458 ZNF274 GTRD no Bone Marrow (K562) 21839236
chr19 3387747 3388458 ZNF274 GTRD no Bone Marrow (K562) 108366531
chr19 3387782 3388442 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 21839239
chr19 3387782 3388442 ZZZ3 ENCODE Uniform TFBS no Cervix (HeLa-S3) 108366535
chr19 3387825 3388670 ZNF274 GTRD no Blood (GM12878) 21839245
chr19 3387825 3388670 ZNF274 GTRD no Blood (GM12878) 108366541
chr19 3387884 3388444 ZBTB33 GTRD no Brain (SK-N-SH) 21839249
chr19 3387884 3388444 ZBTB33 GTRD no Brain (SK-N-SH) 108366545
chr19 3388018 3388783 ZNF274 GTRD no Bone Marrow (K562) 21839254
chr19 3388018 3388783 ZNF274 GTRD no Bone Marrow (K562) 108366550
chr19 3388032 3388610 ZNF274 GTRD no Liver (HepG2) 21839255
chr19 3388032 3388610 ZNF274 GTRD no Liver (HepG2) 108366551
chr19 3388099 3389424 ZNF274 GTRD no Bone Marrow (K562) 21839256
chr19 3388099 3389424 ZNF274 GTRD no Bone Marrow (K562) 108366552
chr19 3388101 3388576 ZNF274 GTRD no Liver (HepG2) 21839257
chr19 3388101 3388576 ZNF274 GTRD no Liver (HepG2) 108366553
Genes associated with rs542461260[chr19:3388438], comfirmed by eQTL
Back to top
Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More