EnhancerDB
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  3. rs542472577[chr1:3237489]
Enhancers that have rs542472577[chr1:3237489]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 3220368 3259315 enh11429
Bone Marrow (K562) Astrocyte Colon (HCT116) Pancreas Uterus Blood (T-cell) Kidney Epithelial (MCF-7) Stomach Ovary Bone (Osteoblast) Thyroid Pancreas (Panc1) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Muscle (Myoblast) Spleen Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Muscle (A673) Heart
chr1 3237165 3237518 vista102
VISTA
Transcript factors that have rs542472577[chr1:3237489]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 3236534 3237516 TCF7L2 GTRD no Colon (HCT116) 107801849
chr1 3237479 3237500 ZNF263 JASPAR yes 26279511
chr1 3237479 3237500 ZNF263 JASPAR yes 118218200
chr1 3237483 3237493 SP1 JASPAR yes 26279512
chr1 3237483 3237493 SP1 JASPAR yes 118218201
chr1 3237488 3237498 NKX2-3 JASPAR yes 26279513
chr1 3237488 3237498 NKX2-3 JASPAR yes 118218202
chr1 3237489 3237498 NKX2-8 JASPAR yes 26279514
chr1 3237489 3237498 NKX2-8 JASPAR yes 118218203
Genes associated with rs542472577[chr1:3237489], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More