EnhancerDB
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  3. rs542652220[chr19:928297]
Enhancers that have rs542652220[chr19:928297]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr19 927725 963215 enh4948
Bone Marrow (K562) Liver (HepG2) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Large Intestine Prostate (RWPE1) Astrocyte Bone (Osteoblast) Lung Blood (GM12878) Stomach Placenta Colon (HCT116) Thyroid Blood (Karpas-422) Pancreas Uterus Blood (T-cell) Heart
chr19 928103 928378 vista28120
VISTA
Transcript factors that have rs542652220[chr19:928297]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr19 923179 928553 TCF7L2 GTRD no Colon (HCT116) 21830464
chr19 923179 928553 TCF7L2 GTRD no Colon (HCT116) 108347854
chr19 923179 928553 TCF7L2 GTRD no Colon (HCT116) 108347855
chr19 923226 929363 TCF7L2 GTRD no Colon (HCT116) 21830465
chr19 923226 929363 TCF7L2 GTRD no Colon (HCT116) 108347856
chr19 923226 929363 TCF7L2 GTRD no Colon (HCT116) 108347857
chr19 923303 929248 ZNF274 GTRD no Bone Marrow (K562) 21830466
chr19 923303 929248 ZNF274 GTRD no Bone Marrow (K562) 108347858
chr19 923303 929248 ZNF274 GTRD no Bone Marrow (K562) 108347859
chr19 923508 929338 ZNF274 GTRD no Blood (GM12878) 21830468
chr19 923508 929338 ZNF274 GTRD no Blood (GM12878) 108347862
chr19 923508 929338 ZNF274 GTRD no Blood (GM12878) 108347863
chr19 923660 929134 ZNF274 GTRD no Blood (GM12878) 21830469
chr19 923660 929134 ZNF274 GTRD no Blood (GM12878) 108347865
chr19 923660 929134 ZNF274 GTRD no Blood (GM12878) 108347866
chr19 923796 929798 TCF7L2 GTRD no Colon (HCT116) 21830471
chr19 923796 929798 TCF7L2 GTRD no Colon (HCT116) 108347870
chr19 923796 929798 TCF7L2 GTRD no Colon (HCT116) 108347871
chr19 923954 928841 ZNF274 GTRD no Blood (GM12878) 21830474
chr19 923954 928841 ZNF274 GTRD no Blood (GM12878) 108347882
chr19 923954 928841 ZNF274 GTRD no Blood (GM12878) 108347883
chr19 924186 928588 TCF7L2 GTRD no Colon (HCT116) 21830478
chr19 924186 928588 TCF7L2 GTRD no Colon (HCT116) 108347893
chr19 924186 928588 TCF7L2 GTRD no Colon (HCT116) 108347894
chr19 924266 929230 TCF7L2 GTRD no Colon (HCT116) 21830479
chr19 924266 929230 TCF7L2 GTRD no Colon (HCT116) 108347897
chr19 924266 929230 TCF7L2 GTRD no Colon (HCT116) 108347898
chr19 924310 928499 ZNF274 GTRD no Liver (HepG2) 21830480
chr19 924310 928499 ZNF274 GTRD no Liver (HepG2) 108347899
chr19 924310 928499 ZNF274 GTRD no Liver (HepG2) 108347900
chr19 924400 929368 ZNF274 GTRD no Liver (HepG2) 21830482
chr19 924400 929368 ZNF274 GTRD no Liver (HepG2) 108347911
chr19 924400 929368 ZNF274 GTRD no Liver (HepG2) 108347912
chr19 924441 929408 ZNF274 GTRD no Liver (HepG2) 21830484
chr19 924441 929408 ZNF274 GTRD no Liver (HepG2) 108347915
chr19 924441 929408 ZNF274 GTRD no Liver (HepG2) 108347916
chr19 924454 929206 ZNF274 GTRD no Bone Marrow (K562) 21830485
chr19 924454 929206 ZNF274 GTRD no Bone Marrow (K562) 108347923
chr19 924454 929206 ZNF274 GTRD no Bone Marrow (K562) 108347924
chr19 924515 928617 TCF7L2 GTRD no Colon (HCT116) 21830487
chr19 924515 928617 TCF7L2 GTRD no Colon (HCT116) 108347942
chr19 924515 928617 TCF7L2 GTRD no Colon (HCT116) 108347943
chr19 924534 928840 ZNF274 GTRD no Bone Marrow (K562) 21830488
chr19 924534 928840 ZNF274 GTRD no Bone Marrow (K562) 108347946
chr19 924534 928840 ZNF274 GTRD no Bone Marrow (K562) 108347947
chr19 924624 928411 ZNF274 GTRD no Liver (HepG2) 21830490
chr19 924624 928411 ZNF274 GTRD no Liver (HepG2) 108347978
chr19 924624 928411 ZNF274 GTRD no Liver (HepG2) 108347979
chr19 926142 928334 TEF1 GTRD no Bone (Osteoblast) 21830491
chr19 926142 928334 TEF1 GTRD no Bone (Osteoblast) 108348113
chr19 926703 928473 ZNF274 GTRD no Liver (HepG2) 21830492
chr19 926703 928473 ZNF274 GTRD no Liver (HepG2) 108348114
chr19 926794 928348 ZNF274 GTRD no Liver (HepG2) 21830493
chr19 926794 928348 ZNF274 GTRD no Liver (HepG2) 108348115
chr19 926840 928301 ZNF274 GTRD no Liver (HepG2) 21830494
chr19 926840 928301 ZNF274 GTRD no Liver (HepG2) 108348116
chr19 926990 928478 ZNF274 GTRD no Liver (HepG2) 21830495
chr19 926990 928478 ZNF274 GTRD no Liver (HepG2) 108348117
chr19 927300 928534 ZNF274 GTRD no Blood (GM12878) 21830497
chr19 927300 928534 ZNF274 GTRD no Blood (GM12878) 108348119
chr19 927682 928498 ZNF143 GTRD no Epithelial (MCF-7) 21830501
chr19 927682 928498 ZNF143 GTRD no Epithelial (MCF-7) 108348123
chr19 927845 928946 ZNF274 GTRD no Blood (GM12878) 21830503
chr19 927845 928946 ZNF274 GTRD no Blood (GM12878) 108348125
chr19 927854 929528 TCF7L2 GTRD no Colon (HCT116) 21830504
chr19 927854 929528 TCF7L2 GTRD no Colon (HCT116) 108348126
chr19 927900 928465 ZNF274 GTRD no Blood (GM12878) 21830506
chr19 927900 928465 ZNF274 GTRD no Blood (GM12878) 108348128
chr19 927909 928333 ZNF143 GTRD no Epithelial (MCF-7) 21830507
chr19 927909 928333 ZNF143 GTRD no Epithelial (MCF-7) 108348129
chr19 927989 928431 ZNF274 GTRD no Blood (GM12878) 21830508
chr19 927989 928431 ZNF274 GTRD no Blood (GM12878) 108348130
chr19 928006 928485 ZNF274 GTRD no Blood (GM12878) 21830509
chr19 928006 928485 ZNF274 GTRD no Blood (GM12878) 108348131
chr19 928085 928935 ZNF274 GTRD no Bone Marrow (K562) 21830510
chr19 928085 928935 ZNF274 GTRD no Bone Marrow (K562) 108348132
chr19 928121 928341 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 21830511
chr19 928121 928341 ZZZ3 ENCODE Uniform TFBS no Blood (GM12878) 108348133
chr19 928139 928444 ZNF274 GTRD no Blood (GM12878) 21830512
chr19 928139 928444 ZNF274 GTRD no Blood (GM12878) 108348134
chr19 928181 928909 ZNF274 GTRD no Bone Marrow (K562) 21830513
chr19 928181 928909 ZNF274 GTRD no Bone Marrow (K562) 108348135
chr19 928250 928928 ZNF274 GTRD no Bone Marrow (K562) 21830514
chr19 928250 928928 ZNF274 GTRD no Bone Marrow (K562) 108348136
chr19 928292 928297 SP1 TRANSFAC yes 70777732
chr19 928292 928297 SP1 TRANSFAC yes 111982929
chr19 928293 928298 SP1 TRANSFAC yes 70777733
chr19 928293 928298 SP1 TRANSFAC yes 111982930
Genes associated with rs542652220[chr19:928297], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More