EnhancerDB
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  3. rs542734389[chr1:202029900]
Enhancers that have rs542734389[chr1:202029900]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 202022729 202063855 enh12534
Bone Marrow (K562) Liver Astrocyte Colon (HCT116) Pancreas Epithelial (MCF-7) Stomach Brain (SK-N-SH) Pancreas (Panc1) Neural Stem Cells (H9) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Lung Heart
Transcript factors that have rs542734389[chr1:202029900]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 202027868 202029941 ZNF143 GTRD no Epithelial (MCF-7) 21366115
chr1 202028173 202030388 ZNF143 GTRD no Epithelial (MCF-7) 21366117
chr1 202028173 202030388 ZNF143 GTRD no Epithelial (MCF-7) 107857633
chr1 202028255 202030254 ZNF143 GTRD no Epithelial (MCF-7) 21366118
chr1 202028429 202029935 ZNF143 GTRD no Epithelial (MCF-7) 21366121
chr1 202028802 202030528 TCF7L2 GTRD no Colon (HCT116) 21366124
chr1 202028802 202030528 TCF7L2 GTRD no Colon (HCT116) 107857634
chr1 202028830 202030301 ZBTB33 GTRD no Lung (A549) 107857635
chr1 202028854 202030374 ZNF274 GTRD no Bone Marrow (K562) 21366126
chr1 202028854 202030374 ZNF274 GTRD no Bone Marrow (K562) 107857636
chr1 202028858 202030440 ZBTB33 GTRD no Lung (A549) 107857637
chr1 202028865 202030427 ZNF274 GTRD no Cervix (HeLa-S3) 21366127
chr1 202028865 202030427 ZNF274 GTRD no Cervix (HeLa-S3) 107857638
chr1 202028869 202030060 AR GTRD no Prostate (PC-3) 21366128
chr1 202028875 202029928 ZNF274 GTRD no Cervix (HeLa-S3) 21366129
chr1 202028885 202030512 ZBTB33 GTRD no Lung (A549) 107857639
chr1 202028888 202030063 TCF7L2 GTRD no Colon (HCT116) 21366131
chr1 202028891 202030332 ZNF274 GTRD no Bone Marrow (K562) 21366133
chr1 202028891 202030332 ZNF274 GTRD no Bone Marrow (K562) 107857640
chr1 202028895 202030244 ZNF143 GTRD no Epithelial (MCF-7) 21366134
chr1 202028897 202029965 ZNF143 GTRD no Epithelial (MCF-7) 21366135
chr1 202028897 202029991 ZNF274 GTRD no Cervix (HeLa-S3) 21366136
chr1 202028906 202030405 ZBTB33 GTRD no Lung (A549) 107857641
chr1 202028952 202029967 ZNF274 GTRD no Bone Marrow (K562) 21366143
chr1 202028966 202030266 ZBTB33 GTRD no Lung (A549) 107857642
chr1 202028969 202030437 ZBTB33 GTRD no Lung (A549) 107857643
chr1 202028977 202030278 ZNF274 GTRD no Bone Marrow (K562) 21366147
chr1 202028977 202030278 ZNF274 GTRD no Bone Marrow (K562) 107857644
chr1 202029001 202029933 ZNF274 GTRD no Bone Marrow (K562) 21366150
chr1 202029002 202030134 ZNF274 GTRD no Bone Marrow (K562) 21366151
chr1 202029053 202030455 ZNF274 GTRD no Bone Marrow (K562) 21366161
chr1 202029053 202030455 ZNF274 GTRD no Bone Marrow (K562) 107857645
chr1 202029068 202030200 ZNF143 GTRD no Epithelial (MCF-7) 21366163
chr1 202029069 202029983 ZNF143 GTRD no Epithelial (MCF-7) 21366164
chr1 202029098 202029962 ZNF143 GTRD no Epithelial (MCF-7) 21366168
chr1 202029110 202030306 ZNF274 GTRD no Bone Marrow (K562) 21366171
chr1 202029110 202030306 ZNF274 GTRD no Bone Marrow (K562) 107857646
chr1 202029114 202030393 ZNF143 GTRD no Epithelial (MCF-7) 21366172
chr1 202029114 202030393 ZNF143 GTRD no Epithelial (MCF-7) 107857647
chr1 202029175 202030374 ZNF274 GTRD no Bone Marrow (K562) 21366178
chr1 202029175 202030374 ZNF274 GTRD no Bone Marrow (K562) 107857648
chr1 202029191 202030146 ZNF143 GTRD no Epithelial (MCF-7) 21366180
chr1 202029210 202030250 ZNF274 GTRD no Bone Marrow (K562) 21366184
chr1 202029232 202030198 ZNF143 GTRD no Epithelial (MCF-7) 21366185
chr1 202029245 202030410 ZNF274 GTRD no Bone Marrow (K562) 21366188
chr1 202029245 202030410 ZNF274 GTRD no Bone Marrow (K562) 107857649
chr1 202029255 202030131 ZNF274 GTRD no Cervix (HeLa-S3) 21366189
chr1 202029316 202030303 ZNF274 GTRD no Bone Marrow (K562) 21366191
chr1 202029316 202030303 ZNF274 GTRD no Bone Marrow (K562) 107857650
chr1 202029339 202030136 ZNF143 GTRD no Epithelial (MCF-7) 21366192
chr1 202029352 202030120 ZNF143 GTRD no Epithelial (MCF-7) 21366193
chr1 202029401 202030242 ZNF274 GTRD no Bone Marrow (K562) 21366194
chr1 202029505 202030150 ZNF274 GTRD no Cervix (HeLa-S3) 21366195
chr1 202029633 202030357 ZNF274 GTRD no Bone Marrow (K562) 21366196
chr1 202029633 202030357 ZNF274 GTRD no Bone Marrow (K562) 107857651
chr1 202029652 202030221 ZNF274 GTRD no Bone Marrow (K562) 21366198
chr1 202029666 202030161 ZNF274 GTRD no Bone Marrow (K562) 21366199
chr1 202029746 202030107 ZNF274 GTRD no Bone Marrow (K562) 21366200
chr1 202029782 202030121 ZNF274 GTRD no Bone Marrow (K562) 21366201
chr1 202029801 202030216 ZNF274 GTRD no Liver (HepG2) 21366202
chr1 202029810 202030085 ZNF274 GTRD no Bone Marrow (K562) 21366203
chr1 202029820 202030070 ZNF274 GTRD no Bone Marrow (K562) 21366204
chr1 202029840 202030224 ZNF274 GTRD no Bone Marrow (K562) 21366205
chr1 202029890 202029909 PITX2 TRANSFAC yes 34547802
chr1 202029896 202029909 ZBTB18 JASPAR yes 34547803
chr1 202029897 202029909 PKNOX1 JASPAR yes 34547804
chr1 202029897 202029909 TGIF1 JASPAR yes 34547805
chr1 202029898 202029907 SNAI2 JASPAR yes 34547806
chr1 202029898 202029908 FIGLA JASPAR yes 34547807
chr1 202029898 202029908 ID4 JASPAR yes 34547808
chr1 202029898 202029908 TCF3 JASPAR yes 34547809
chr1 202029898 202029908 TCF4 JASPAR yes 34547810
chr1 202029900 202029909 ZEB1 JASPAR yes 34547811
chr1 202029900 202029910 TBX21 JASPAR yes 34547812
Genes associated with rs542734389[chr1:202029900], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More