EnhancerDB
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  3. rs542744871[chr3:9393954]
Enhancers that have rs542744871[chr3:9393954]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr3 9386845 9398579 enh20314
Prostate (PC-3) Liver (HepG2) Brain (SK-N-SH) Large Intestine Lung (PC-9) Esophagus Astrocyte Blood (OCI-LY7) Stomach Placenta Breast Thyroid Embryonic Stem Cell Line (H1-hESC) Muscle (Myoblast) Pancreas Neural Stem Cells (H9) Blood (T-cell) Epithelial (MCF-7)
Transcript factors that have rs542744871[chr3:9393954]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr3 9393947 9393965 NR3C1 JASPAR yes 346519
chr3 9393950 9393971 IRF1 JASPAR yes 346520
chr3 9393952 9393973 IRF1 JASPAR yes 346521
chr3 9393953 9393957 YY1 TRANSFAC yes 346522
chr3 9393953 9393968 FOXP1 JASPAR yes 346523
chr3 9393953 9393974 IRF1 JASPAR yes 346524
chr3 9393954 9393969 FOXP1 JASPAR yes 346525
chr3 9393954 9393975 IRF1 JASPAR yes 346526
Genes associated with rs542744871[chr3:9393954], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More