EnhancerDB
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  3. rs542811397[chr12:117353445]
Enhancers that have rs542811397[chr12:117353445]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr12 117350745 117365303 enh2616
Bone Marrow (K562) Astrocyte Colon (HCT116) Blood (Karpas-422) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Blood (OCI-LY7) Lung (A549) Thyroid Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Spleen Liver (HepG2) Prostate (RWPE1) Muscle (A673) Heart
Transcript factors that have rs542811397[chr12:117353445]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr12 117353439 117353460 IRF1 JASPAR yes 124031837
chr12 117353441 117353456 PRDM1 JASPAR yes 124031838
chr12 117353441 117353456 STAT2 JASPAR yes 124031839
chr12 117353441 117353462 IRF1 JASPAR yes 124031840
chr12 117353442 117353463 IRF1 JASPAR yes 124031841
chr12 117353443 117353464 IRF1 JASPAR yes 124031842
chr12 117353444 117353459 FOXP1 JASPAR yes 124031843
chr12 117353444 117353465 IRF1 JASPAR yes 124031844
chr12 117353445 117353460 FOXP1 JASPAR yes 124031845
chr12 117353445 117353466 IRF1 JASPAR yes 124031846
Genes associated with rs542811397[chr12:117353445], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More