EnhancerDB
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  3. rs542830623[chr1:230224163]
Enhancers that have rs542830623[chr1:230224163]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 230203175 230225395 enh12769
Astrocyte Colon (HCT116) Pancreas Stomach Epithelial (MCF-7) Skin (Keratinocyte) Brain (SK-N-SH) Ovary Bone (Osteoblast) Thyroid Peripheral Blood (MM.1S) Pancreas (Panc1) Thymus Prostate (PC-3) Cervix (HeLa-S3) Esophagus Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Prostate (RWPE1) Muscle (A673)
Transcript factors that have rs542830623[chr1:230224163]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 230224158 230224166 MEIS3 JASPAR yes 36020246
chr1 230224161 230224182 IRF1 JASPAR yes 36020247
Genes associated with rs542830623[chr1:230224163], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More