EnhancerDB
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  3. rs542940054[chr1:221999181]
Enhancers that have rs542940054[chr1:221999181]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 221995465 222021667 enh12697
Liver Astrocyte Colon (HCT116) Pancreas Blood (T-cell) Epithelial (MCF-7) Stomach Skin (Keratinocyte) Bone (Osteoblast) Peripheral Blood (MM.1S) Prostate (PC-3) Cervix (HeLa-S3) Esophagus Blood (GM12878) Placenta Lung (PC-9) Muscle (Myoblast) Muscle (Myotube) Prostate (RWPE1) Lung Heart
Transcript factors that have rs542940054[chr1:221999181]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 221999168 221999182 RORA JASPAR yes 35571838
chr1 221999173 221999181 PAX4 JASPAR yes 35571840
Genes associated with rs542940054[chr1:221999181], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More