EnhancerDB
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  3. rs542964648[chr17:39939541]
Enhancers that have rs542964648[chr17:39939541]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr17 39926525 39940665 enh17154
Prostate (PC-3) Cervix (HeLa-S3) Epithelial (MCF-7) Brain (SK-N-SH) Esophagus Astrocyte Lung Placenta Colon (HCT116) Uterus Thyroid Pancreas (Panc1) Lung (PC-9) Pancreas Spleen Muscle (Myotube) Neural Stem Cells (H9) Heart
Transcript factors that have rs542964648[chr17:39939541]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr17 39939534 39939554 RREB1 JASPAR yes 54275965
chr17 39939534 39939555 IRF1 JASPAR yes 54275966
chr17 39939535 39939556 IRF1 JASPAR yes 54275967
chr17 39939540 39939561 IRF1 JASPAR yes 54275968
chr17 39939541 39939547 TCF4 TRANSFAC yes 54275969
chr17 39939541 39939556 FOXP1 JASPAR yes 54275970
chr17 39939541 39939562 IRF1 JASPAR yes 54275971
Genes associated with rs542964648[chr17:39939541], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More