EnhancerDB
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  3. rs543308870[chr1:202000038]
Enhancers that have rs543308870[chr1:202000038]
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Chrom. Start End Enhancer ID Tissues that enhancer appears More
chr1 201996265 202020435 enh12533
Brain (SK-N-MC) Astrocyte Colon (HCT116) Pancreas Uterus Kidney Stomach Epithelial (MCF-7) Bone (Osteoblast) Peripheral Blood (MM.1S) Pancreas (Panc1) Prostate (PC-3) Cervix (HeLa-S3) Large Intestine Esophagus Placenta Lung (PC-9) Breast Muscle (Myoblast) Muscle (Myotube) Liver (HepG2) Muscle (A673)
Transcript factors that have rs543308870[chr1:202000038]
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Chrom. Start End TF name Source Predicted site? Tissue id More
chr1 201999254 202000504 ZNF274 GTRD no Cervix (HeLa-S3) 21365456
chr1 201999256 202000428 ZNF143 GTRD no Epithelial (MCF-7) 21365457
chr1 201999457 202000189 ZNF143 GTRD no Epithelial (MCF-7) 21365458
chr1 201999479 202000100 ZNF274 GTRD no Liver (HepG2) 21365459
chr1 201999494 202000077 ZNF143 GTRD no Epithelial (MCF-7) 21365460
chr1 201999521 202000180 ZNF274 GTRD no Liver (HepG2) 21365461
chr1 201999525 202000491 ZNF143 GTRD no Epithelial (MCF-7) 21365462
chr1 201999527 202000049 ZNF274 GTRD no Liver (HepG2) 21365463
chr1 201999537 202000116 ZNF274 GTRD no Liver (HepG2) 21365464
chr1 201999538 202000127 ZNF274 GTRD no Cervix (HeLa-S3) 21365465
chr1 201999543 202000056 ZNF274 GTRD no Liver (HepG2) 21365467
chr1 201999544 202000062 ZNF274 GTRD no Liver (HepG2) 21365468
chr1 201999549 202000163 ZNF143 GTRD no Epithelial (MCF-7) 21365469
chr1 201999552 202000081 ZNF274 GTRD no Liver (HepG2) 21365470
chr1 201999558 202000228 ZNF274 GTRD no Liver (HepG2) 21365472
chr1 201999576 202000047 ZNF143 GTRD no Epithelial (MCF-7) 21365473
chr1 201999578 202000093 ZNF274 GTRD no Liver (HepG2) 21365474
chr1 201999582 202000068 ZNF274 GTRD no Liver (HepG2) 21365475
chr1 201999590 202000143 ZNF143 GTRD no Epithelial (MCF-7) 21365476
chr1 201999594 202000043 ZNF274 GTRD no Cervix (HeLa-S3) 21365478
chr1 201999597 202000154 ZNF143 GTRD no Epithelial (MCF-7) 21365479
chr1 201999598 202000049 ZNF274 GTRD no Cervix (HeLa-S3) 21365480
chr1 201999600 202000059 ZNF143 GTRD no Epithelial (MCF-7) 21365481
chr1 201999602 202000114 ZNF143 GTRD no Epithelial (MCF-7) 21365482
chr1 201999606 202000104 ZNF143 GTRD no Epithelial (MCF-7) 21365483
chr1 201999658 202000103 ZNF143 GTRD no Epithelial (MCF-7) 21365488
chr1 201999726 202000163 TCF7L2 GTRD no Colon (HCT116) 21365489
chr1 202000018 202000039 IRF1 JASPAR yes 34543543
chr1 202000034 202000046 MEF2A JASPAR yes 34543547
chr1 202000034 202000046 MEF2B JASPAR yes 34543548
chr1 202000034 202000046 MEF2D JASPAR yes 34543549
chr1 202000035 202000045 MEF2A JASPAR yes 34543550
chr1 202000036 202000044 FOXL1 JASPAR yes 34543551
chr1 202000036 202000048 MEF2A JASPAR yes 34543552
chr1 202000036 202000048 MEF2B JASPAR yes 34543553
chr1 202000036 202000048 MEF2D JASPAR yes 34543554
chr1 202000037 202000047 MEF2A JASPAR yes 34543555
chr1 202000038 202000046 FOXL1 JASPAR yes 34543556
Genes associated with rs543308870[chr1:202000038], comfirmed by eQTL
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Blank TSI value indicates lack of sufficient expression for calculation
Chrom. Start End Strand Gene name Ensembl ID TSS of gene Distance between TSS and SNP Tissue q Value id More